High-Protein Pepperoni Breakfast Cups

Featured in: Rustic Weekend Comfort Recipes

These savory breakfast cups combine the classic flavors of pizza with the convenience of a handheld morning meal. Each cup packs 11 grams of protein into a portable format perfect for busy weekdays. The egg and Greek yogurt base creates a fluffy texture while melted mozzarella and pepperoni deliver that irresistible Italian-inspired taste.

Baked in a standard muffin tin, these cups come together in just 35 minutes from start to finish. They reheat beautifully, making them ideal for meal prep. Serve with extra pizza sauce for dipping or enjoy them straight from the container.

Updated on Mon, 09 Feb 2026 15:02:51 GMT
Golden-brown High-Protein Pepperoni Breakfast Cups are lifted from a muffin tin, showing melted mozzarella and pepperoni pieces. Save
Golden-brown High-Protein Pepperoni Breakfast Cups are lifted from a muffin tin, showing melted mozzarella and pepperoni pieces. | saffronbrook.com

Start your morning with a flavorful punch of protein using these High-Protein Pepperoni Breakfast Cups. These savory mini frittatas deliver all the classic Italian flavors of a pizza in a convenient, portable form. With 11g of protein and only 135 calories per cup, they are a satisfying and low-carb way to power through your day.

Golden-brown High-Protein Pepperoni Breakfast Cups are lifted from a muffin tin, showing melted mozzarella and pepperoni pieces. Save
Golden-brown High-Protein Pepperoni Breakfast Cups are lifted from a muffin tin, showing melted mozzarella and pepperoni pieces. | saffronbrook.com

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These breakfast cups are incredibly versatile and easy to assemble. By whisking together a base of eggs and Greek yogurt, you create a creamy, custard-like texture that pairs perfectly with the salty pepperoni and melted mozzarella cheese.

Ingredients

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  • Egg Mixture: 6 large eggs, 1/2 cup plain Greek yogurt (unsweetened), 1/4 cup milk, 1/4 tsp salt, 1/4 tsp black pepper, 1/2 tsp dried oregano, 1/2 tsp dried basil.
  • Filling: 3/4 cup shredded mozzarella cheese, 1/2 cup mini pepperoni slices (or chopped regular pepperoni), 1/4 cup finely diced red bell pepper, 2 tbsp finely diced red onion, 2 tbsp grated Parmesan cheese, 2 tbsp pizza sauce.

Instructions

Step 1: Prep
Preheat oven to 375°F (190°C). Grease a 6-cup muffin tin or line with silicone liners.
Step 2: Whisk Eggs
In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth.
Step 3: Combine Filling
In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.
Step 4: Assemble
Evenly divide the filling mixture among the muffin cups. Pour the egg mixture over the filling, filling each cup about 3/4 full. Use a fork to gently stir each cup to distribute the filling.
Step 5: Bake
Bake for 18–20 minutes, or until the centers are just set and tops are lightly golden.
Step 6: Cool
Cool for 5 minutes before removing from the tin. Serve warm with extra pizza sauce if desired.

Zusatztipps für die Zubereitung

To ensure a smooth texture, whisk the Greek yogurt and eggs thoroughly until no large lumps remain. Using silicone liners is highly recommended as it prevents sticking and makes cleaning the muffin tin much easier. Be sure to only fill each cup 3/4 full to allow the eggs space to rise as they bake.

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Varianten und Anpassungen

For a vegetarian version, simply omit the pepperoni and add sautéed mushrooms or fresh spinach. If you prefer a different cheese profile, you can easily substitute the mozzarella with shredded cheddar or provolone cheese to suit your taste.

Serviervorschläge

Serve these cups warm with a side of extra pizza sauce for dipping. If you have leftovers, they can be stored in the refrigerator for up to 4 days; just reheat them gently in the microwave for a quick and savory breakfast on the go.

Six High-Protein Pepperoni Breakfast Cups sit on a white plate, ready to be dipped into a small bowl of pizza sauce. Save
Six High-Protein Pepperoni Breakfast Cups sit on a white plate, ready to be dipped into a small bowl of pizza sauce. | saffronbrook.com

With their perfect balance of protein and classic Italian ingredients, these breakfast cups are sure to become a staple in your meal prep routine. Enjoy the delicious taste of pizza any time of day!

Saffron Brook Recipe Q&As

Can I make these breakfast cups ahead of time?

Yes, these cups store exceptionally well in the refrigerator for up to 4 days. Simply reheat in the microwave for 30-60 seconds until warmed through. They're perfect for meal prep Sunday.

What makes these cups high in protein?

Each cup contains 11 grams of protein, primarily from the large eggs and Greek yogurt base. The mozzarella and Parmesan cheese also contribute additional protein, making these a filling breakfast option.

Can I substitute the pepperoni for a vegetarian version?

Absolutely. Replace the pepperoni with sautéed mushrooms, spinach, or diced bell peppers for a vegetarian alternative. The pizza flavor profile remains delicious with just the cheese and vegetables.

What type of muffin tin works best?

A standard 6-cup or 12-cup muffin tin works perfectly. Silicone liners make removal effortless, but well-greased metal tins also work great. Just fill each cup about 3/4 full to allow for rising.

How do I know when the cups are done baking?

The cups are finished when the centers are just set and the tops are lightly golden, around 18-20 minutes. They should not be jiggly in the center but will continue cooking slightly as they cool.

Can I freeze these breakfast cups?

Yes, freeze cooled cups in an airtight container for up to 2 months. Thaw overnight in the refrigerator and reheat in the microwave. They may lose a bit of texture but remain tasty.

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High-Protein Pepperoni Breakfast Cups

Protein-packed muffin tin cups featuring pepperoni, mozzarella, and pizza flavors for an easy handheld breakfast.

Prep time
15 mins
Cook time
20 mins
Time required
35 mins
Created by Ariana Brooks


Skill Level Easy

Cuisine Type American

Serves 3 Portions

Dietary notes Low in Carbs

Ingredient List

Egg Mixture

01 6 large eggs
02 1/2 cup plain Greek yogurt, unsweetened
03 1/4 cup whole milk
04 1/4 teaspoon salt
05 1/4 teaspoon black pepper
06 1/2 teaspoon dried oregano
07 1/2 teaspoon dried basil

Filling

01 3/4 cup shredded mozzarella cheese
02 1/2 cup mini pepperoni slices
03 1/4 cup finely diced red bell pepper
04 2 tablespoons finely diced red onion
05 2 tablespoons grated Parmesan cheese
06 2 tablespoons pizza sauce

How to Make

Step 01

Prepare Muffin Tin: Preheat oven to 375°F. Grease a 6-cup muffin tin or line with silicone liners.

Step 02

Create Egg Base: In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth and well combined.

Step 03

Combine Filling Components: In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.

Step 04

Distribute Filling: Evenly divide the filling mixture among the muffin cups, distributing ingredients equally across all 6 cups.

Step 05

Add Egg Mixture: Pour the egg mixture over the filling, filling each cup approximately three-quarters full. Use a fork to gently stir each cup and distribute the filling throughout.

Step 06

Bake Until Set: Bake for 18 to 20 minutes, or until the centers are just set and the tops are lightly golden brown.

Step 07

Cool and Remove: Cool for 5 minutes before removing from the tin. Serve warm with additional pizza sauce if desired.

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Equipment Needed

  • 6-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons
  • Fork

Allergy advice

Review ingredients for potential allergens and reach out to a healthcare expert if unsure.
  • Contains eggs
  • Contains dairy and milk products
  • Pepperoni and pizza sauce may contain gluten; always verify product labels for potential wheat derivatives and cross-contamination risks.

Nutrition per serving

Nutritional details are for reference only and shouldn't replace professional advice.
  • Energy: 135
  • Total fat: 9 g
  • Carbohydrates: 2 g
  • Proteins: 11 g

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